I'm not using that standard regulated psu (I just brought the dac module only) so the caps I use may not work so well with that supply you use, problem is your using a lot of low ESR caps like Oscon and Panny FC/FM which are good caps but can cause stability problems if a standard reg like LM317/337 is used, the output pin on those regs can ring with too low ESR.
Apart from measuring worse ringing can make the sound bad too
I mainly started the thread as it was a fun and a cheap project, the dac as standard has obvious flaws like having all its 5v and 3.3v supplies shared from a single source, the PLL filter values are wrong and so is the Differential output filter, most things can be improved though and most is covered in the thread.
TBH I'd have changed each cap in stages and evaluated the differences, its easy to go changing a lot of parts at once but this can make things hard trying to isolate which parts are ruinning the sound
Only thing I can recommend is taking out the Oscons,tants and replace with a decent quality general purpose type, give it a few days to run in and see how it sounds. I'd then try changing the caps in stages, this also ensures you don't go too far in the wrong direction.
Modding this stuff to your own personal preference can be tedious but with a bit of patience usually pays off
BTW don't always trust what you read regarding low ESR caps, their not always better in every application